T wo RES idue P attern A nalysis for S equence S tructur ER elationships

Sample Input

TLDEEKRQREESKFEEMKKKHGDHPKVHHPGSKDQLKEVWEEADGLDPNEFDPKTFFKLHDVNNDRFLDEQELEALFTKE LEKVYDPKNEEDDMVEMEEERLRMREHVMNEVDINKDRLVTLEEFLRATEKKEFLEPDSWETLDQQQLFTEDELKEFESH ISQQEDELRKKAEELQKQKEELQRQHDQLQAQKQELQQVV*
TRLADTVRTKGLRAAPSAQRVMLDMGDRKEVKMLPKSSFSINNLVPEAVQSDNHSGHSHHNSHHPHHHHHHHHHHPPPPQ QPQRAAAAEEEDEEKAPLLLPPPAAGALEAAKAEALAGKGEAGAAAAELEEKEKAAEEKKGAAEGGKDGESGKEGEKKNG KYEKPPFSYNALIMMAIRQSPEKRLTLNGIYEFIMKNFPYYRENKNGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWML DPSSDDVFIGGTTDKLRRRSTTSRAKLAFKRGARLTSTGLTFMDRAGSLYWPMSPFLSLHHPRASSTLSYNGTASAYPSH PMPYSSVLTQNSLGNNHSFSTSNGLSVDRLVNGEIPYATHHLTAAALAASVPCGLSVPCSGTYSLNPCSVNLLAGQTSYF SPTSLTPQ*
LKEAEQRAELKEAEQRAELKEAEQRAELKEAEQRAE*
LPALRKSLKTLQLEYLDLYLIHWPLSSQ*
LSPLSVALALSHLALGAQNHTLQRLQQV*
TLDEEKRQREESKFEEMKKKHGDHPKVHHPGSKDQLKEVWEEADGLDPNEFDPKTFFKLHDVNNDRFLDEQELEALFTKE LEKVYDPKNEEDDMVEMEEERLRMREHVMNEVDINKDRLVTLEEFLRATEKKEFLEPDSWETLDQQQLFTEDELKEFESH ISQQEDELRKKAEELQKQKEELQRQHDQLQAQKQELQQVV*