Publications co-authored with Natalio Krasnogor

12. Smith, R.E., Liang, M., Bacardit, J., Stout, M., Krasnogor, N. & Hirst, J.D., A Learning Classifier System with Mutual-Information-Based Fitness. Evolutionary Intelligence, 3, 31–50 (2010).
DOI: http://dx.doi.org/10.1007/s12065-010-0037-9
11. Bacardit, J., Stout, M., Hirst, J.D., Valencia, A., Smith R.E., & Krasnogor, N., Automated alphabet reduction for protein datasets. BMC Bioinformatics, 10, 6 (2009).
DOI: http://dx.doi.org/10.1186/1471-2105-10-6
10. Stout, M., Bacardit, J., Hirst, J.D., Smith, R.E. & Krasnogor, N., Prediction of Topological Contacts in Proteins Using Learning Classifier Systems. Soft Comput., 13, 245–258 (2009).
DOI: http://dx.doi.org/10.1007/s00500-008-0318-8
9. Oakley, M.T., Barthel, D., Bykov, Y., Garibaldi, J.M., Burke, E.K., Krasnogor, N. & Hirst, J.D., Search Strategies in Structural Bioinformatics. Curr. Prot. Peptide. Sci., 9, 260–274 (2008).
DOI: http://dx.doi.org/10.2174/138920308784534032
8. Stout, M., Bacardit, J., Hirst, J.D. & Krasnogor, N., Prediction of Recursive Convex Hull Class Assignments for Protein Residues Using Learning Classifier Systems. Bioinformatics, 24, 916–923 (2008).
DOI: http://dx.doi.org/10.1093/bioinformatics/btn050
7. Barthel, D., Hirst, J.D., Blazewicz, J., Burke, E.K. & Krasnogor, N., ProCKSI: a decision support system for Protein (Structure) Comparison, Knowledge, Similarity and Information. BMC Bioinformatics, 8, 416 (2007).
DOI: http://dx.doi.org/10.1186/1471-2105-8-416
6. Bacardit, J., Stout, M., Hirst, J.D., Sastry, K. Llora, X. & Krasnogor, N., Automated alphabet reduction method with evolutionary algorithms for protein structure prediction. GECCO '07: Proceedings of the 9th annual conference on Genetic and evolutionary computation, London, England, (ISBN 978-1-59593-697-4), 346–353 (2007).
DOI: http://dx.doi.org/10.1145/1276958.1277033
5. Bacardit, J., Stout, M., Krasnogor, N., Hirst, J.D., & Blazewicz, J., Coordination number prediction using learning classifier systems: performance and interpretability. In: Proceedings of the 8th Annual Conference on Genetic and Evolutionary Computation (Seattle, Washington, USA, July 08 - 12, 2006). GECCO '06, ACM Press, New York, NY, 247–254 (2006).
DOI: http://dx.doi.org/10.1145/1143997.1144041
4. Stout, M., Bacardit, J., Hirst, J.D., Krasnogor, N., & Blazewicz, J., From HP Lattice Models to Real Proteins: coordination number prediction using Learning Classifier Systems. Lectures Notes in Computer Science, 3907, 208–220 (2006).
DOI: http://dx.doi.org/10.1007/11732242_19
3. Pelta, D.A., Krasnogor, N., Bousono-Calzon, C., Verdegay, J.L., Hirst, J.D., Burke, E.K., A Fuzzy Sets based Generalization of Contact Maps for the Overlap of Protein Structures. Fuzzy Sets and Systems, 152, 103–121 (2005).
DOI: http://dx.doi.org/10.1016/j.fss.2004.10.017
2. Krasnogor, N., Blackburne, B.P., Burke, E.K. & Hirst, J.D., Multimeme Algorithms for Protein Structure Prediction. Proceedings of the 7th International Conference on Parallel Problem Solving from Nature, Granada, Spain, Publishers: Springer, pp 769–778 (2002).
1. Carr, B., Hart, W.E., Hirst, J.D., Krasnogor, N., Burke, E.K & Smith, J., Alignment of Protein Structures with a Memetic Evolutionary Algorithm. Proceedings of the Genetic and Evolutionary Computation Conference 2002, NewYork, USA, Publishers: Morgan Kaufmann, pp 1027–1034 (2002).